From: Adupa Vasista (adupavasista_at_gmail.com)
Date: Wed Jun 05 2019 - 09:20:17 CDT
Thanks, I'll check them out.
On Wed, Jun 5, 2019 at 7:21 PM Joao Ribeiro <jribeiro_at_ks.uiuc.edu> wrote:
> Dear Adupa,
>
>
>
> You need to provide more information about the exact steps that you are
> taking. We cannot guess what you are doing.
>
>
>
> “ Although my simulation was perfect”- I believe that this means that namd
> terminated successfully, and you can open the log (using vi for example),
> and the log file looks ok, without any signs of corruption, truncation or
> you did not append the two simulations in the same log file.
>
>
>
> If you did not find any of the points mentioned above, then open VMD,
> Extensions->Analysis->NAMD Plot. Then File->”Select NAMD Log File” (select
> your log file)-> Select the quantities that you want to plot->”Plot
> Selected Data”. If you have a lot of points to plot, this might take some
> time.
>
>
>
> If what I describe doesn’t work, please post the error message in the
> terminal window or any other message that VMD prints.
>
>
>
> Best
>
>
>
> João
>
>
>
> ……………………………………………………...
> João Vieira Ribeiro
> Theoretical and Computational Biophysics Group
> Beckman Institute, University of Illinois
>
> http://www.ks.uiuc.edu/~jribeiro/
>
> jribeiro_at_illinois.edu
>
> +1 (217) 3005851
>
>
>
> *From: *<owner-namd-l_at_ks.uiuc.edu> on behalf of Adupa Vasista <
> adupavasista_at_gmail.com>
> *Reply-To: *<namd-l_at_ks.uiuc.edu>, Adupa Vasista <adupavasista_at_gmail.com>
> *Date: *Wednesday, June 5, 2019 at 8:33 AM
> *To: *Pratik Narain Srivastava <pratik.narain_at_gmail.com>
> *Cc: *NAMD list <namd-l_at_ks.uiuc.edu>
> *Subject: *Re: namd-l: multiplot: Data vector empty, ignoring plot!
>
>
>
> Yes, I did.
>
>
>
> On Wed, Jun 5, 2019 at 6:56 PM Pratik Narain Srivastava <
> pratik.narain_at_gmail.com> wrote:
>
> I assume you are using NAMD Plot plugin. Did you actually upload the log
> file before selecting the quantities and trying to plot them? Please look
> at the plugin help documentation.
>
>
>
> On Wed, 5 Jun, 2019, 6:53 PM Adupa Vasista, <adupavasista_at_gmail.com>
> wrote:
>
>
> Although my simulation was perfect i am unable to get plots for
> volume,total3,etc.
>
> in my log file ,i can find data for these quantities.
>
>
>
> Thank you
>
> --
>
>
> *A.VasistaM.Tech,Department Of Chemical Engineering,*
>
> *IIT Guwahati.*
>
>
>
>
> --
>
>
> *A.VasistaM.Tech,Department Of Chemical Engineering,*
>
> *IIT Guwahati.*
>
-- *A.VasistaM.Tech,Department Of Chemical Engineering,* *IIT Guwahati.*
This archive was generated by hypermail 2.1.6 : Thu Dec 31 2020 - 23:17:11 CST