Positive energy for protein

From: Ashkan Shekaari (shekaari_at_email.kntu.ac.ir)
Date: Mon Dec 03 2018 - 08:20:58 CST

Dear Experts,

When I extract energy values for my protein using NAMDEnergy in VMD, I get positive values at all time steps.
Is it a valid result? The atomic structure of the protein does not collapse at all during the simulation.

Ashkan Shekaari, 
Ph.D Candidate in Solid State Physics, 
K. N. Toosi University of Technology, 
Tehran, Iran 
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