From: Peter Freddolino (petefred_at_umich.edu)
Date: Fri Dec 08 2017 - 11:54:00 CST
Ok, so what atom selections are you using?
On Fri, Dec 8, 2017 at 9:22 AM, Shahee Islam <shaheeislam726_at_gmail.com>
> Thank you so much for your reply.i want to calculate the rmsd of
> backbone.And Still when I try to recentering the coarse grained proteins
> ,the atoms are not selecting.
> On Dec 8, 2017 7:29 PM, "Peter Freddolino" <petefred_at_umich.edu> wrote:
>> You would need to send much more information on how you're trying to
>> calculate the RMSD. My wild guess is that you're looking for alpha carbon
>> or recognizable backbone atoms when none exist.
>> On Fri, Dec 8, 2017 at 3:33 AM, Shahee Islam <shaheeislam726_at_gmail.com>
>>> i have prepared my system according to rbcg tutorial.Now i want to
>>> analyse my system by vmd,but during the analysis(rmsd) atoms are not
>>> selected and also in the time of recentering of proteins.Can anyone please
>>> help me why this is happening.
>>> Also i want to know is there any other method to analyse the coarse
>>> grained system(which is made according to rbcg tutorial).
>>> Thankig you
>>> Shahee Islam
>>> University of calcutta
>>> Department of chemistry
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