From: Peter Freddolino (petefred_at_umich.edu)
Date: Fri Dec 08 2017 - 07:59:51 CST
You would need to send much more information on how you're trying to
calculate the RMSD. My wild guess is that you're looking for alpha carbon
or recognizable backbone atoms when none exist.
On Fri, Dec 8, 2017 at 3:33 AM, Shahee Islam <shaheeislam726_at_gmail.com>
wrote:
> Hi,
> i have prepared my system according to rbcg tutorial.Now i want to analyse
> my system by vmd,but during the analysis(rmsd) atoms are not selected and
> also in the time of recentering of proteins.Can anyone please help me why
> this is happening.
> Also i want to know is there any other method to analyse the coarse
> grained system(which is made according to rbcg tutorial).
>
> Thankig you
> Shahee Islam
> University of calcutta
> Department of chemistry
>
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