Re: RMSD of backbone changes rapidly at the beginning of production run

From: Fidan Sumbul (fidansumbul_at_gmail.com)
Date: Fri Nov 03 2017 - 06:27:42 CDT

Hi Monica,

I think you are wondering why the RMSD is changing while you are keeping the backbone of you protein during the minimization. But I don’t see any minimization step in your configuration file. You just used “run” without any minimization.

Cheers!

FIDAN SUMBUL
Fidan Sumbul, PhD
Postdoctoral Researcher
U1006 INSERM

Parc Scientifique et Technologique de Luminy
Bâtiment Inserm TPR2 bloc 5
163 avenue de Luminy
13009 Marseille
France

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