No minimized system after running minimization in NAMD

From: Roshan Shrestha (
Date: Thu Sep 07 2017 - 09:17:02 CDT

Dear all,
            Here, I have attached a conf file for the minimization of my
structure in NAMD. From my previous experience of working with Gromacs, it
uses the output of the minimization for equilibration and hence production
run. But, after running minimization in NAMD, it does not give me minimized
system which I can use for production run in NAMD. So, does it mean that my
previous pdb file (ionized.pdb) has been minimized or I should have got
other file (.pdb) after minimization.

Roshan Shrestha
M.Sc (Physics)
Central Department of Physics, Tribhuvan University
Kathmandu, Nepal

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