error during minimization

From: Lara rajam (lara.4884_at_gmail.com)
Date: Mon Feb 27 2017 - 13:07:44 CST

*Dear NAMD *

*I am trying to run a minimization with extrabond on. *
*when I start minimization the energy is too high and stops with as
following *

Warning: Tuple 3231 with atoms 1776(6) 1774(7) 1772(2) missing patch 7

Warning: Tuple 2497 with atoms 1371(6) 1373(25) 1377(8) missing patch 25

Warning: Tuple 2238 with atoms 1224(0) 1226(22) 1229(26) missing patch 22

Warning: Tuple 3926 with atoms 2144(9) 2143(7) 2140(17) missing patch 7

Warning: Tuple 2894 with atoms 1594(24) 1600(7) 1601(2) missing patch 7

Warning: Tuple 2895 with atoms 1594(24) 1600(7) 1602(26) missing patch 7

Warning: Tuple 2471 with atoms 1357(20) 1367(23) 1369(8) missing patch 23

Warning: Tuple 2508 with atoms 1375(18) 1373(25) 1377(8) missing patch 25

Warning: Tuple 3334 with atoms 1832(18) 1828(21) 1829(8) missing patch 21

Warning: Tuple 4888 with atoms 1829(8) 1828(21) 1832(18) 1840(24) missing
patch 21

Warning: Tuple 3045 with atoms 1138(26) 1149(5) 1151(18) 1153(6) missing
patch 5

Warning: Tuple 3663 with atoms 1371(6) 1373(25) 1377(8) 1378(8) missing
patch 25

Warning: Tuple 3664 with atoms 1371(6) 1373(25) 1377(8) 1379(8) missing
patch 25

Warning: Tuple 3665 with atoms 1371(6) 1373(25) 1377(8) 1380(8) missing
patch 25

Warning: Tuple 3667 with atoms 1372(6) 1371(6) 1373(25) 1377(8) missing
patch 25

Warning: Tuple 4864 with atoms 1823(2) 1826(0) 1828(21) 1829(8) missing
patch 21

Warning: Tuple 3340 with atoms 1244(2) 1247(23) 1250(23) 1252(6) missing
patch 23

Warning: Tuple 265 with atoms 88(0) 85(5) 83(8) 100(8) missing patch 5

Warning: Tuple 3279 with atoms 1224(0) 1226(22) 1229(26) 1232(2) missing
patch 22

Warning: Tuple 3280 with atoms 1224(0) 1226(22) 1229(26) 1230(26) missing
patch 22

Warning: Tuple 3281 with atoms 1224(0) 1226(22) 1229(26) 1231(26) missing
patch 22

Warning: Tuple 3282 with atoms 1225(0) 1224(0) 1226(22) 1229(26) missing
patch 22

Warning: Tuple 4873 with atoms 1826(0) 1828(21) 1829(8) 1830(8) missing
patch 21

Warning: Tuple 4874 with atoms 1826(0) 1828(21) 1829(8) 1831(8) missing
patch 21

Warning: Tuple 4794 with atoms 1792(0) 1789(25) 1787(24) 1805(8) missing
patch 25

*What does this realy mean ? any input to fix this will be useful thank you
in advance *

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