Reg membrane assembly

From: Vidhya Sankar (
Date: Thu Aug 17 2017 - 00:37:42 CDT

Dear namd user
My system contain Assembly of cyclic peptide placed 2 Armstrong Distance above the Z axis of Lipid Membrane
Lipid Membrane .
But when i run protein constrained equilibration , My water molecules on the head of lipid diffused upwards along assembly.Could you please suggest How can i solve the problem ? Is it possible by editing keep_water_out.tcl script . if it can which part of the tcl script should i edit ?
 I Request your valuable suggestion

with regardsS.Vidhyaasnkar

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