Simulation of the mechanical stress in NAMD

From: James Starlight (jmsstarlight_at_gmail.com)
Date: Mon Jul 17 2017 - 02:55:30 CDT

• Next message: Giacomo Fiorin: "Re: Simulation of the mechanical stress in NAMD"
• Previous message: Francesco Pietra: "Re: ABF: umbrella_int.awk"
• Next in thread: Giacomo Fiorin: "Re: Simulation of the mechanical stress in NAMD"
• Reply: Giacomo Fiorin: "Re: Simulation of the mechanical stress in NAMD"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Dear NAMD Users!

I am using a molecular dynamics simulation for the investigation of
the activation of Mechanic-sensing ionic channel. My question: is it
possible to introduce a mechanical stress acting on the membrane or
directly on selected part of the protein, assuming that its
mechanic-sensing domains are known from the X-ray structure?

Thanks for help!

Gleb

• Next message: Giacomo Fiorin: "Re: Simulation of the mechanical stress in NAMD"
• Previous message: Francesco Pietra: "Re: ABF: umbrella_int.awk"
• Next in thread: Giacomo Fiorin: "Re: Simulation of the mechanical stress in NAMD"
• Reply: Giacomo Fiorin: "Re: Simulation of the mechanical stress in NAMD"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Sun Dec 31 2017 - 23:21:28 CST