missing binary operator before token "("

From: Fırat Yılmaz (firat.yilmaz_at_eduline.com.tr)
Date: Thu Jun 15 2017 - 02:30:12 CDT

• Next message: Rabeta Yeasmin: "Setting up the range for movement of protein in umbrella sampling"
• Previous message: Haohao Fu: "Re: Gyration in colvars doesn't work with eABF."
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Hi Everyone,

Using NAMD_2.11_Source.tar.gz

Cluster System : Brightcluster with infiniband and GPU enabled.

Compiler : intel-mkl-2017 intel-mpi-2017 intel-compiler-common-2017

      arch :x86_64

      version : 2017.1-18_cm7.3

      from Repo: cm-rhel6-7.3-updates

Infiniband :Mellanox Technologies MT27500 Family [ConnectX-3]

GPU : 2 X Tesla M60 cuda 80 toolkit & 375.20 nvidia-driver

Bare Metal :PowerEdge R730

I am told to build namd on a cluster system (Bright Cluster) with GPU
and Infiniband support on multiple nodes and followed the nvidia's
instructions

http://www.nvidia.com/object/gpu-accelerated-applications-namd-installation.html

I am able to build charmrun but getting the following error on namd build:

*1-/cm/shared/apps/intel/compilers_and_libraries/2017.1.132/compiler/include/limits.h:36:54:
error: missing binary operator before token "("*
In file included from
/cm/shared/apps/cuda-latest//bin/..//include/math_functions.h:8827,
                  from
/cm/shared/apps/cuda-latest//bin/..//include/common_functions.h:249,
                  from
/cm/shared/apps/cuda-latest//bin/..//include/cuda_runtime.h:116,
                  from <command-line>:0:
*2-/cm/shared/apps/intel/compilers_and_libraries/2017.1.132/compiler/include/math.h:108:3:
error: #error "This Intel <math.h> is for use with only the Intel
compilers!"*
In file included from
/cm/shared/apps/cuda-latest//bin/..//include/cuda.h:58,
                  from src/ComputePmeCUDAKernel.cu:8:
*3-/cm/shared/apps/intel/compilers_and_libraries/2017.1.132/compiler/include/stdint.h:43:54:
error: missing binary operator before token "("*
make: *** [obj/ComputePmeCUDAKernel.o] Error 1

When i search from 2nd error it says that it may be related to the
compiler conflict so i checked the loaded parallel compilers and be sure
that only intel parallel compiler is loaded.

I see that there is bunch of mails for this particular error but i
couldn't find a solution for my problem.

Can you suggest anything about it?

Best Regards

-- 
Fırat Yılmaz
Systems Engineer

• Next message: Rabeta Yeasmin: "Setting up the range for movement of protein in umbrella sampling"
• Previous message: Haohao Fu: "Re: Gyration in colvars doesn't work with eABF."
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Sun Dec 31 2017 - 23:21:22 CST