Re: multipld .dcd analysis by VMD

From: Zhao Qin (zhaoqin02_at_gmail.com)
Date: Thu Jan 21 2016 - 12:40:25 CST

Hi Nancy,

Please check the tool catdcd, which should work for you.

VMD has several analysis tools. You can also build your own by writing
TCL scripts.

Zhao

2016-01-20 14:53 GMT-05:00 Deng, Jinxia (Nancy) <jinxianancy.deng_at_zoetis.com>:
> Hi All,
>
>
>
> I have a set of .dcd file with every 25 ns as interval, so wonder whether
> you could guild me how to deal with multiple .dcd files, can I “concatenate”
> them into one, or any tool allows to read in multiple in a row??
>
>
>
> My second question is any tool you could share for NAMD trajectory analysis?
> I have experience with VMD, but wonder any others??
>
>
>
> Thanks and looking forward to hearing from you.
>
>
>
> Nancy
>
>
>
> Nancy Deng, Ph.D. | Principal Scientist, Computational Chemistry & Molecular
> Modeling
>
> Zoetis Inc| Global Therapeutics Research | 333 Portage Street, Kalamazoo, MI
> 49007
>
> Office: 2693599121 | jinxianancy.deng_at_zoetis.com
>
>
>
>

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