About Bond Deletion

From: Vidhya Sankar (vidhyasankar7928_at_yahoo.com)
Date: Wed Apr 10 2013 - 22:12:33 CDT

Dear Namd User  I am beginner  of VMD & Namd  I have Constructed My system (CNT wrapped bt Cyclic Petides) But When I open My .gro file in VMD There is plenty of  unusual bond (50 bonds) between Protein and CNT i want To Delete I am Not Able to  Pick those two atom Interactively ( because structure is Shabby) So i Decided To select and delete  those unusually  Bonded  atoms through Command prompt .it would be Highly helpful if somebody Help me in Giving commands  I need the Commands Thanks in Advance  With Regards S.Vidhyasankar

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