Re: NAMD- molecular dynamics

From: Aron Broom (
Date: Thu Sep 13 2012 - 17:46:17 CDT

you can find tutorials off of the NAMD site. They range in complexity and
should cover a lot of what you want to do.


On Thu, Sep 13, 2012 at 3:55 PM, Shomesankar Bhunia <> wrote:

> Hii
> i am trying to run a ligand protein MD using NAMD. I have used AMBER and
> generated the .prmtop and .inpcrd files using xleap in antechamber. Can
> anyone please help me out how to set up a MDS with these outputs? Any
> tutorial will be helpful. Thanks in advance.

Aron Broom M.Sc
PhD Student
Department of Chemistry
University of Waterloo

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