From: Aron Broom (broomsday_at_gmail.com)
Date: Fri Jun 22 2012 - 13:49:57 CDT
just as clarification, that would be the multicore-CUDA binary
On Fri, Jun 22, 2012 at 2:49 PM, Aron Broom <broomsday_at_gmail.com> wrote:
> You want to download the multicore binary, and then the command is quite
> simple:
>
> namd2 +p3 +idlepoll simulation.conf
>
>
> On Fri, Jun 22, 2012 at 2:04 PM, Brett T. Hannigan <brett_at_thehannigans.org
> > wrote:
>
>> When using NAMD 2.8 CUDA, I could run on my local machine using multiple
>> cores by using charmrun.
>> *charmrun ++local +p3 namd2 +idlepoll simulation.conf*
>> However, when I downloaded NAMD 2.9 and tried the same thing, it dies
>> saying
>> "FATAL ERROR: Unknown command-line option ++local"
>>
>> It looks like the charmrun included in the NAMD 2.9 CUDA is a simple
>> script as described for the MPI version, while the charmrun in the 2.8 CUDA
>> version I downloaded is an actual binary. Any suggestions on what the
>> proper thing to do here is?
>>
>> For the time being, I downloaded the non-CUDA NAMD 2.9, which has a
>> binary version of charmrun, and I'm trying using that charmrun with the
>> CUDA namd2, but I'm not sure if it's proper to mix and match like that...
>>
>> --
>> ******************************************
>> Brett T. Hannigan
>> 8011 Ardleigh St.
>> Philadelphia, PA 19118
>> brett.hannigan_at_gmail.com
>> ******************************************
>>
>
>
>
> --
> Aron Broom M.Sc
> PhD Student
> Department of Chemistry
> University of Waterloo
>
>
-- Aron Broom M.Sc PhD Student Department of Chemistry University of Waterloo
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