RE: deca-Ala simulations with different cutoff produce different results

From: Jun Zhang (
Date: Mon May 16 2011 - 03:47:44 CDT

Hi Norman:

  I have repeated my simulations with the same seed (and single thread running) and it confirms to me that these two simulations leads to different conclusion.
  Maybe, the longer cutoff makes the interactions between the two ends available so the peptide chain twists -- I just guess so.

Jun Zhang
Nankai University

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