Using VMD paratool

From: 李佳键 (
Date: Mon Jul 11 2011 - 16:24:12 CDT

Dear All:

     Does anyone knows how to generate topology and parameter file through
paratool (VMD plug-in) for iron complex nested in parent molecular? (Not for
the whole protein.)

     I referred to VMD users guide:,
however didn't get the clue dealing with parametrized part from a pdb file.


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