RE: Asking for some sample PDB and PSF files of carbon nanotube

From: JC Gumbart (gumbart_at_ks.uiuc.edu)
Date: Wed Dec 15 2010 - 10:52:32 CST

The tutorial í░Simulation of Water Permeation through Nanotubes í░ also
includes a script to build nanotubes. Find it here:
http://www.ks.uiuc.edu/Training/Tutorials/#bionanotechnology

 

From: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] On Behalf
Of ???
Sent: Wednesday, December 15, 2010 4:19 AM
To: namd-l_at_ks.uiuc.edu
Subject: namd-l: Asking for some sample PDB and PSF files of carbon nanotube

 

Dear All,

     I am now trying to construct pdb and psf files for a single-layer
graphene. I followed the constructing approach of SiN shown in tutorial
"Modeling Nanopores for Sequencing DNA", but it did not work well.

     Therefore, I hope to take sample PDB and PSF files of carbon nanotubes
as a reference. So could anyone give me some help?

      Thanks very much!

-- 
Ph. D Yuhui He (║╬ě╣╗ď)
Institute of Scientific and Industrial Research, Osaka University;
Mihogaoka 8-1, Ibaraki, Osaka 567-0047. JAPAN

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