Re: ADENOSINE-5-DIPHOSPHORIBOSE topology

From: Eduard Schreiner (eduard.schreiner_at_gmail.com)
Date: Tue Oct 05 2010 - 22:11:50 CDT

The ADP parameters should be contained in the standard CHARMM 27 force
field for nucleic acids:
top_all27_prot_lipid_na.inp
par_all27_prot_lipid_na.inp
You can find them for instance with the distribution of VMD.

I recall, there was already a question like yours on the mailing list.
You may wanna check that.

eddi

On Tue, Oct 5, 2010 at 8:56 PM, Raul Araya <arayasecchi_at_gmail.com> wrote:
> Dear NAMD users:
>
> Does any one has the topology and/or CHARMM parameters for
> ADENOSINE-5-DIPHOSPHORIBOSE??
>
>
> Raúl Araya Secchi
> B.Sc Molecular Biotechnology.
> Molecular Biotechnology Engineer.
> PhD Student (Biotechnology Program. UNAB, Chile)
> Computational Biology Lab (DLab)
> Center for Mathematical Modeling (CMM)
> Facultad de Ciencias Físicas y Matemáticas.
> Universidad de Chile.
>

-- 
--
=============================================================================
Eduard Schreiner
Theoretical and Computational Biophysics Group
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801
Phone: 217-244-4361
Fax: 217-244-6078
http://www.ks.uiuc.edu/~eschrein/
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