AMBER force field in NAMD

From: Patargias, George (
Date: Fri Sep 10 2010 - 09:48:01 CDT


I am sorry if I repeat an already posted question.

Do I understand correctly that in order to use the
Amber FF parameters in NAMD, we need a
parm*.dat file and an amber coordinate file?

Do these files need to be in a special format?

Dont we need to provide NAMD with a topology too
(in the "structure" entry of the conf file).

Thanks a lot.

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