write out the snapshot from MD trajectory

From: mjyang (mjyang_at_hku.hk)
Date: Fri Aug 27 2010 - 04:59:32 CDT

Dear NAMD users,
    I performed a NPT MD simulation by NAMD under periodic condition for 40 ns. But the protein protrudes out of the water box along MD trajectory.
Could someone please tell me how to write out the snapshot at 40ns with the protein located at the center of the box?

Many thanks.


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