From: Anton Arkhipov (anton_at_ks.uiuc.edu)
Date: Tue Apr 06 2010 - 10:31:57 CDT
Ed,
There's a useful manual for cgtools, which is a VMD plugin that can do
what you ask:
http://www.ks.uiuc.edu/Research/vmd/plugins/cgtools/
If you are doing shape-based coarse-graining, there's also a tutorial,
please see at the bottom of this page:
http://www.ks.uiuc.edu/Training/Tutorials/
Anton.
On Apr 5, 2010, at 11:12 AM, Edward Lyman wrote:
> Hi all,
>
> Is there any specific documentation about setting up coarse-grained
> simulations in NAMD (eg, how to generate psf, pdb, and parameter
> inputs)? Or is this still at the 'do it yourself' stage?
>
> Thanks very much,
> Ed
>
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:53:59 CST