Re: coarse-grained model building

From: Anton Arkhipov (
Date: Tue Apr 06 2010 - 10:31:57 CDT


There's a useful manual for cgtools, which is a VMD plugin that can do
what you ask:

If you are doing shape-based coarse-graining, there's also a tutorial,
please see at the bottom of this page:


On Apr 5, 2010, at 11:12 AM, Edward Lyman wrote:

> Hi all,
> Is there any specific documentation about setting up coarse-grained
> simulations in NAMD (eg, how to generate psf, pdb, and parameter
> inputs)? Or is this still at the 'do it yourself' stage?
> Thanks very much,
> Ed

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