CmiAbort+0x5f

From: Demet Akten (demet.akten_at_gmail.com)
Date: Fri Apr 02 2010 - 05:25:54 CDT

Dear All,

I am using the compiled version of NAMD_2.7b2_Linux-x86_64-ibverbs/ to
perform an MD simulation on a protein-membrane system. The program
stops after running for about a day with the following message. I saw
similar emails on the list, however couldn't find any answer for it:

WRITING EXTENDED SYSTEM TO RESTART FILE AT STEP 28588000
WRITING COORDINATES TO DCD FILE AT STEP 28588000
WRITING COORDINATES TO RESTART FILE AT STEP 28588000
FINISHED WRITING RESTART COORDINATES
WRITING VELOCITIES TO RESTART FILE AT STEP 28588000
FINISHED WRITING RESTART VELOCITIES
size: 0, len:4792.
[23] Stack Traceback:
   [0] CmiAbort+0x5f [0xabb81b]
   [1] /cruncher/home/akten/NAMD_2.7b2_Linux-x86_64-ibverbs/namd2
[0xab533e]
   [2] /cruncher/home/akten/NAMD_2.7b2_Linux-x86_64-ibverbs/namd2
[0xab40ab]
   [3] /cruncher/home/akten/NAMD_2.7b2_Linux-x86_64-ibverbs/namd2
[0xab252f]
   [4] /cruncher/home/akten/NAMD_2.7b2_Linux-x86_64-ibverbs/namd2
[0xabf2d2]
   [5] CcdCallBacks+0x104 [0xabf400]
   [6] CsdScheduleForever+0xd8 [0xabc664]
   [7] CsdScheduler+0x1c [0xabc232]
   [8] _Z11master_initiPPc+0x2d6 [0x5121f6]
   [9] _ZN7BackEnd4initEiPPc+0x31 [0x511f19]
   [10] main+0x2f [0x50d80f]
   [11] __libc_start_main+0xf4 [0x7ffff71011c4]
   [12] _ZNSt8ios_base4InitD1Ev+0x4a [0x508bda]

Thanks,

Demet

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