Re: CMAP dimension limited to 24 dimensions

From: Grace Brannigan (gracebrannigan_at_gmail.com)
Date: Fri Mar 19 2010 - 14:29:13 CDT

• Next message: Mary Newcomb: "Error: This application has requested the Runtime to terminate it in an unusual way: Please contact the application's support team for more information" after specifying the namd2.exe path"
• Previous message: Odysseas Axillews: "request help- namd error abortion stack error"
• In reply to: alpertunga daðcan: "CMAP dimension limited to 24 dimensions"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Hi Alper,

You can probably get pretty good results just interpolating the 12 x 12 CMAP
table onto a 24 x 24 table, using cubic or spline interpolation.

-Grace

On Thu, Mar 18, 2010 at 10:42 PM, alpertunga daðcan
<alpertungax_at_yahoo.com>wrote:

> Hello,
>
> I need to use a parameter file written for an unconventional residue. Its
> CMAP dimension is 12. When I use it in NAMD 2.7b, I get "FATAL ERROR: Sorry,
> only CMAP dimension of 24 is supported". Is there a way to get through this
> error without excluding CMAP?
>
> Thanks,
>
> Alper
>
>

• Next message: Mary Newcomb: "Error: This application has requested the Runtime to terminate it in an unusual way: Please contact the application's support team for more information" after specifying the namd2.exe path"
• Previous message: Odysseas Axillews: "request help- namd error abortion stack error"
• In reply to: alpertunga daðcan: "CMAP dimension limited to 24 dimensions"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:53:55 CST