Re: Re: namd 2.7b2 or later - amberff/prmtop causes segfault during startup phase

From: Vlad Cojocaru (Vlad.Cojocaru_at_h-its.org)
Date: Wed Feb 24 2010 - 07:11:42 CST

Nicolas,

"coordinates" and "ambercoor" take different file formats ... Did you
use the correct files with each option ?
What was the "correct" 1-4scaling value and what was the "wrong" one ?

Vlad

Nicolas Sapay wrote:
> Hello,
>
> Actually, I have the same problem. In my case, the culprit seems to be
> the 1-4scaling statement. When I have commented the line and
> copy/paste a new one from a previous file, there was no more
> segmentation fault. I suppose there is a reading error at some point,
> but I cannot be more precise. The weird thing is that the input file
> with the "wrong" 1-4scaling line was working with the "coordinates"
> statement, but not with the "ambercoor" one.
>
> Regards
> Nicolas

-- 
----------------------------------------------------------------------------
Dr. Vlad Cojocaru
Heidelberg Institute for Theoretical Studies
HITS gGmbH
Molecular and Cellular Modelling Group
Schloss-Wolfsbrunnenweg 35
69118 Heidelberg
Tel: ++49-6221-533202
Fax: ++49-6221-533298
e-mail:Vlad.Cojocaru[at]h-its.org
http://projects.villa-bosch.de/mcm/people/cojocaru/
----------------------------------------------------------------------------
Amtgericht Mannheim / HRB 337446
Managing Directors: Dr. h.c. Klaus Tschira, Prof. Dr.-Ing. Andreas Reuter
http://www.h-its.org (http://eml-research.de)
----------------------------------------------------------------------------

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:53:49 CST