Re: Error in Minimization

From: Joshua Adelman (
Date: Sun Nov 08 2009 - 08:05:11 CST

Hi Ale,

It is unclear from your email what the problem is you are attempting
to describe. You need to provide more detail into what you saw and
what you expected to see that makes you think the result is incorrect.

Best wishes,

On Nov 7, 2009, at 11:45 AM, Ale Gomez wrote:

> Hi everyone.
> I try to minimize a protein, bacrhodopsin, in a lipid membrane. But
> everything looks great until minimize is ready. When I saw the log
> file seems that anything had change. Could anybody help me.
> I attached preparation script for vmd (preparacion.tcl) and minimize
> script for namd (bacmin.conf).
> Regards
> -------------------------------------------------------------------
> Ale Gomez
> Biophysics and Molecular Modelling Group
> Physics Department
> Escuela Politecnica Nacional, Quito-Ecuador
> Ladron de Guevara E11-253.
> Phone: 593-95292408
> <preparacion.tcl><bacmin.conf>

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