FreeEnergy and minimization

From: Roman Petrenko (
Date: Thu Apr 30 2009 - 23:31:55 CDT

Dear all,
If one uses constraints inside of FreeEnergy plugin are they taken
into account during minimization procedure? I mean before actual MD
starts. Generally speaking, what options from the namd configuration
are taken into account during minimization?

Roman Petrenko
Physics Department
University of Cincinnati

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