tcl script

From: fett_at_vtr.net
Date: Mon Feb 02 2009 - 21:31:04 CST

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Dear NAMD VMD developers:

I have made a tcl script for analyzing two dcd files at the same time ( a
trajectorie file and a velocity file), I have run the script in 16gb RAM
computer but at some point the script always crashes, if I run the same script
in my mac (2GB of RAM) I am getting the following error:
  
vmd_MACOSXX86(1476,0xa040c720) malloc: *** mmap(size=36864) failed (error
code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
vmd_MACOSXX86(1476,0xa040c720) malloc: *** mmap(size=28672) failed (error
code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
vmd_MACOSXX86(1476,0xa040c720) malloc: *** mmap(size=32768) failed (error
code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
terminate called after throwing an instance of 'std::bad_alloc'
   what(): St9bad_alloc
Abort trap

If you could give some hint about it, it would be great, I have attached the
tcl script so you can look at it.

Regards

Jose Antonio
PhD student

• application/x-tcl attachment: kineticv2.tcl

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