Correlation matrix of the Ca atoms

From: sripad chandan (
Date: Sun Feb 01 2009 - 22:46:14 CST

I want to calculate the Correlation matrix of the Ca atoms (motion) in
a 5 ns simulation done on NAMD, so that the relationship of the
residual and domain motion can be found out.
Is there any possibility of doing it by NAMD/VMD?
It will be very helpful if some one can give a suggestion atleast.
Thanks alot.

Sripad Chandan Patnaik
Research Assistant
National Institute of Technology, Rourkela

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:52:19 CST