From: andy.mastellone_at_alice.it
Date: Thu Jan 22 2009 - 07:20:28 CST
Hi,
before installing NAMD I have some problems related to running charm test routines when dealing with MPI. Both on a single host (ia32 with an OpenMPI implementation) and a multicore host (ia64 with an NECmpi environment) I built successfully charm++ including the MPI files issuing
./build LIBS mpi-linux-ia32(64) icc(ecc) ifort -O2 -DCMK_OPTIMIZE
(I have Intel compilers)
but, when I give a make in
tests/charm++/simplearrayhello
it complains about
andy charm-6.0/tests/charm++/simplearrayhello 114 % make
./../../bin/charmc -language charm++ -o hello hello.o
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiNotifyIdle':
machine.c:(.text+0x202): undefined reference to `MPI_Recv'
machine.c:(.text+0x232): undefined reference to `MPI_Get_count'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiAsyncSendFn_':
machine.c:(.text+0xe82): undefined reference to `MPI_Isend'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiAsyncBroadcastAllFn':
machine.c:(.text+0x11c2): undefined reference to `MPI_Test'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiAsyncBroadcastFn':
machine.c:(.text+0x1622): undefined reference to `MPI_Test'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiReleaseSentMessages':
machine.c:(.text+0x2702): undefined reference to `MPI_Test'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `PumpMsgs':
machine.c:(.text+0x28f2): undefined reference to `MPI_Iprobe'
machine.c:(.text+0x2942): undefined reference to `MPI_Get_count'
machine.c:(.text+0x2992): undefined reference to `MPI_Recv'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiAsyncMsgSent':
machine.c:(.text+0x2e52): undefined reference to `MPI_Test'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiBarrierZero':
machine.c:(.text+0x3182): undefined reference to `MPI_Recv'
machine.c:(.text+0x3232): undefined reference to `MPI_Send'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiCpuTimer':
machine.c:(.text+0x32d2): undefined reference to `MPI_Wtime'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiWallTimer':
machine.c:(.text+0x3352): undefined reference to `MPI_Wtime'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiTimer':
machine.c:(.text+0x33d2): undefined reference to `MPI_Wtime'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiBarrier':
machine.c:(.text+0x34a2): undefined reference to `MPI_Barrier'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiTimerIsSynchronized':
machine.c:(.text+0x3582): undefined reference to `MPI_Attr_get'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiTimerInit':
machine.c:(.text+0x3812): undefined reference to `MPI_Wtime'
machine.c:(.text+0x3852): undefined reference to `MPI_Allreduce'
machine.c:(.text+0x38c2): undefined reference to `MPI_Wtime'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `ConverseInit':
machine.c:(.text+0x3962): undefined reference to `MPI_Init_thread'
machine.c:(.text+0x3992): undefined reference to `MPI_Comm_size'
machine.c:(.text+0x39c2): undefined reference to `MPI_Comm_rank'
machine.c:(.text+0x39e2): undefined reference to `MPI_Get_version'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `ConverseExit':
machine.c:(.text+0x44e2): undefined reference to `MPI_Test'
machine.c:(.text+0x4532): undefined reference to `MPI_Barrier'
machine.c:(.text+0x4592): undefined reference to `MPI_Finalize'
machine.c:(.text+0x46a2): undefined reference to `MPI_Test'
./../../bin/../lib/libconv-cplus-y.a(machine.o): In function `CmiAbort':
machine.c:(.text+0x47f2): undefined reference to `MPI_Abort'
Fatal Error by charmc in directory /u1/maad559/charm-6.0/tests/charm++/simplearrayhello
Command ecpc -rdynamic -o hello -L../../../bin/../lib -I../../../bin/../include ../../../bin/../lib/libldb-rand.o hello.o moduleinit4822.o ../../../bin/../lib/libmemory-default.o ./../../bin/../lib/libthreads-default.o -lck -lconv-cplus-y -lconv-core -lconv-util -lckqt -llammpio -llammpi++ -llamf77mpi -lmpi -llam -laio -laio -lutil -ldl -lm returned error code 1
charmc exiting...
make: *** [hello] Error 1
Conversely, the UDP version (net-linux-....) is fine in all tests in both the machines.
A suggest/help would be very helpful at this stage. Please don't esitate to ask me further details if required. Thank you...
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