SMD question

From: Qiang Zhong (
Date: Sat Dec 08 2007 - 19:26:03 CST

   I am doing a smd simulation, the atom which I add force is hiding
 in bulk of protein and form hydrogen bond with other atom, When I
edit my pull script of tcl, I want to know whether there are waters
beside on my target atom, but I don't know how to detect the waters
neighbor my target atom in tcl script,Could somebody tell me how to do ?
 Thank you very much!

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