SYSTEM ENERGY MINIMIZATION

From: El Escuchado por DIOS (semorale_at_gmail.com)
Date: Wed Dec 05 2007 - 15:06:48 CST

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Greetings from Chile.

 I have some question regards plant protein – membrane system energy
minimization and equilibration:

 1.- I want to make 850ps of equilibration for my system. What should be
the distribution of these steps with and without piston? ... and the
temperature also?

 2.- For the energy minimization of system (protein, membrane, ions, water,
counterions), your recommend to me the use of rigids bonds??...

 I hope your soon response, Thanks for your great help

Samuel Morales N.

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