Howto lengthen a collagen strand (which tool to use)

From: QMarcus_R=F6lz=22?= (m.roelz_at_gmx.de)
Date: Tue Oct 09 2007 - 07:23:03 CDT

• Next message: Peter Freddolino: "Re: Molecule drifts and high average RMSD per residue"
• Previous message: Ambrish: "ptraj"
• Next in thread: Peter Freddolino: "Re: Howto lengthen a collagen strand (which tool to use)"
• Reply: Peter Freddolino: "Re: Howto lengthen a collagen strand (which tool to use)"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Hello out there ;)

I'd like to lengthen a collagen-strand (Triple-Helix).
To do this i'd like to create new atoms, copy existing atoms, and do translations and rotations on atom selections via matrix operations.

I'm not sure which program to use for this purpose. Is VMD + psfgen capable of doing this? I'd like to select some atoms copy them and relocate them.

Can pdb-files be imported in sciLab? Or is there any other tool around?

Thx,

Marcus Rölz

-- 
Ist Ihr Browser Vista-kompatibel? Jetzt die neuesten 
Browser-Versionen downloaden: http://www.gmx.net/de/go/browser

• Next message: Peter Freddolino: "Re: Molecule drifts and high average RMSD per residue"
• Previous message: Ambrish: "ptraj"
• Next in thread: Peter Freddolino: "Re: Howto lengthen a collagen strand (which tool to use)"
• Reply: Peter Freddolino: "Re: Howto lengthen a collagen strand (which tool to use)"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:45:21 CST