From: Arun Krishnan (krishnan_at_ttck.keio.ac.jp)
Date: Mon Jul 09 2007 - 01:18:26 CDT
Hi,
Anyone have any experience with temperature dependent unfolding simulations
with NAMD? What kind of time steps and simulation times to use?
>From what I gather a 2fs time step @500K for about 8ns should be Ok for a
small protein (say something like ubiquitin). Any ideas?
Thanks in advance,
Arun
-- *********************************************** Arun Krishnan, Ph.D, Assistant Professor, Institute for Advanced Biosciences, Keio University, Center Building, Tsuruoka, Yamagata 997-0035 Japan Phone: +81 (0)235-29-0824 Email: krishnan_at_ttck.keio.ac.jp URL: http://www.iab.keio.ac.jp/~krishnan **********************************************
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:44:56 CST