Re: has anyone patched NAG to ASN?

From: JC Gumbart (
Date: Tue Jun 26 2007 - 14:16:00 CDT

Could you please send me your topology file for NAG and the patch you
are attempting to apply, as well as how you are using it and the
specific error you're getting?

On Jun 25, 2007, at 8:57 PM, Irene Newhouse wrote:

> I've managed to create a topology file for NAG [N-acetyl
> glucosamine] which successfully generates a .psf which can be used
> in NAMD for NAG alone. Flushed with success, I tried to write a
> patch to link NAG to ASN, which is where it attaches on the protein
> of current interest. For some reason, I'm having more trouble with
> that than with the topology file, hence my question: has anyone
> already done this? I'd rather not reinvent the wheel.
> Thanks!
> Irene Newhouse
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