how to convert dcd files from namd to charmm

From: regafan_at_usc.es
Date: Thu Mar 15 2007 - 06:50:45 CDT

• Next message: Luca Muccioli: "Re: Why minimization before Molecular Dynamics?"
• Previous message: Pedro Borkowski: "Why minimization before Molecular Dynamics?"
• Next in thread: Alessandro Cembran: "Re: how to convert dcd files from namd to charmm"
• Reply: Alessandro Cembran: "Re: how to convert dcd files from namd to charmm"
• Reply: Alessandro Cembran: "Re: how to convert dcd files from namd to charmm"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Hello,
I have done a simulation of a protein with NAMD, using the Charmm
force field, and now I would like to perform an analysis with CHARMM.
  I have problems of compatibility of the trajectory files obtained
with NAMD and CHARMM. Does anyboy knows how to convert a dcd
trajectory file from NAMD to the correct one used by Charmm?

Thanks a lot!

Rebeca García
Post-doctoral student
Barcelona
Spain

• Next message: Luca Muccioli: "Re: Why minimization before Molecular Dynamics?"
• Previous message: Pedro Borkowski: "Why minimization before Molecular Dynamics?"
• Next in thread: Alessandro Cembran: "Re: how to convert dcd files from namd to charmm"
• Reply: Alessandro Cembran: "Re: how to convert dcd files from namd to charmm"
• Reply: Alessandro Cembran: "Re: how to convert dcd files from namd to charmm"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:44:27 CST