From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Mar 22 2006 - 16:48:08 CST
You might want to try the NAMD Energy plugin or plot energies from the
NAMD log files using either the standalone 'namdplot' or the VMD 'NAMD Plot'
extension. The two VMD features I mention are available in the test versions
of VMD 1.8.4:
http://www.ks.uiuc.edu/Research/vmd/alpha/
John Stone
vmd_at_ks.uiuc.edu
On Wed, Mar 22, 2006 at 02:41:45PM -0800, lily jin wrote:
> Hi,
> I wander how I can calculate the energy for each frame in VMD. Please give some advice. thanks!
>
>
>
> Lily
>
> ---------------------------------
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-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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