Re: Topology file for Building Gramicidin A (tutorial)

From: JC Gumbart (
Date: Tue Feb 07 2006 - 13:20:06 CST

I think they should have been downloaded by VMD in the running of the
tutorial, but in any case, they are located here:

On Feb 7, 2006, at 11:37 AM, M. Madhu wrote:

> Dear NAMD users,
> I am a new NAMD user. I am trying to do the tutorial for Gramicidin in
> explicit
> membrane. In the begining of the tutorail it was mentioned that new
> entries
> were made for formyl and ethanolamide groups in the topology file
> (toppar/top_all27_prot_lipid.inp). I could not find the topology file
> with these
> two groups. I would appreciate if someone can tell me the exact
> location of
> this file (downloadable) or send me the correct topology & parameter
> files
> for doing this tutorial.
> Thank you very much.
> Madhu
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