Re: Trajectory file.

From: s.bora erdemli (serdemli_at_ku.edu.tr)
Date: Fri May 13 2005 - 17:30:58 CDT

• Next message: Boyang Wang: "benzene in NAMD"
• Previous message: Gianluca Interlandi: "Re: Trajectory file."
• In reply to: Boyang Wang: "Trajectory file."
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

      Hi All

      there is also a matlab sript which you can read and write a dcd file with. here is the link which you can download and use:

http://www.ks.uiuc.edu/Development/MDTools/matdcd/

best regards

Sabri Bora Erdemli
Research and Teaching Asistant
KOC UNIVERSITY/TURKEY
Computational Sciences and Engineering
url: http://home.ku.edu.tr/~serdemli

  ----- Original Message -----
  From: Boyang Wang
  To: namd-l_at_ks.uiuc.edu
  Sent: Saturday, May 14, 2005 12:20 AM
  Subject: namd-l: Trajectory file.

  Hi all. I have saved about 80 restart files in a queue. I also have the relative DCD files.
        But I don't know how to read all the coordinates in the DCD files. I just want to know the movement of some special part of the atoms in the simulation.
       Does anyone know how to open DCD file? I opened them before but it didn't show arabic numbers but showed some weird code that was not readable.
       Thanks.
  Boyang.
  Univ, Illinois, Chicago.

------------------------------------------------------------------------------
  Do You Yahoo!?
  150万曲MP3疯狂搜，带您闯入音乐殿堂
  美女明星应有尽有，搜遍美图、艳图和酷图
  1G就是1000兆，雅虎电邮自助扩容！

• Next message: Boyang Wang: "benzene in NAMD"
• Previous message: Gianluca Interlandi: "Re: Trajectory file."
• In reply to: Boyang Wang: "Trajectory file."
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:40:46 CST