From: Alex V. (vav_at_udman.ru)
Date: Fri Mar 26 2004 - 03:31:22 CST
I successfully compiled Namd for Linux-Alpha-MPI-cxx,
but I'm not getting how to provide support for MPI-GM drivers?
I compiled charm++ from latest CVS version as follows:
./build charm++ mpi-linux-axp gm cxx
than what ARCH should be used to build Namd?
Linux-Alpha-MPI-cxx searches for charm++ in
and compilation crashes (not found charm++.h etc.)
How to solve this problem? And also
a had to link libmpi.a -> libmpich.a because
linker couldn't find -lmpi. Are there cleaner ways
to specify that I have MPICH??
Gengbin Zheng wrote:
> I think we haven't compile and test Linux Alpha cluster for a long time.
>But you can try. First download the *latest* charm-5.8 from *cvs* (I have
>made some changes for the config files for Alpha cluster, by guess though
>since I don't have account). Checkout out the
>charm5-8 link on http://charm.cs.uiuc.edu.
> try charm charm++ using cxx:
> ./build charm++ mpi-linux-axp cxx .....
> and NAMD by:
> ./config .... Linux-Alpha-MPI-cxx
> let me know if this works,
>On Sat, 13 Mar 2004, Alex V. wrote:
>>I have the following question:
>>what will I need to run NAMD on cluster,
>>consisting of Alpha 21264 (2 x 667 МHz) processors,
>>running on Marynet 2000 ?
>>They have Red Hat Linux 6.2 (with SMP support) on each node.
>>The parallel software is MPICH for GM with queuing system, so
>>one should run task as follows (as it is written in their computer
>>mpirun [mpi_args] <prgm_name> [prgm_args]
>>Should I recompile NAMD from sources to run on such cluster,
>>or are there compatible binaries from NAMD download page???
>>Thanks in advance!!!
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