...$Bank$¹

Protein Data Bank website: http://www.pdb.org

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... Guide²

The web version of VMD User's Guide can be found at http://www.ks.uiuc.edu/Research/vmd/current/ug/.

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...$Guide$³

http://www.ks.uiuc.edu/Research/vmd/current/ug/

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... acids⁴

More information on MultiSeq can be found in its development homepage http://www.scs.uiuc.edu/~schulten/multiseq

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... conservation⁵

Eastwood, M.P., C. Hardin, Z. Luthey-Schulten, and P.G. Wolynes. ``Evaluating the protein structure-prediction schemes using energy landscape theory.'' IBM J. Res. Dev. 45: 475-497, 2001.  URL:  http://www.research.ibm.com/journal/rd/453/eastwood.pdf

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... $Felsenstein$⁶

J. Felsenstein Inferring Phylogenies. Sinauer Associates, Inc.: 2004.

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