## ## Example script to delete all bonds within a group of selected atoms ## ## usage example: ## mol new 1ap9 ## source deleteallbonds.tcl ## deleteallbonds top all proc deleteallbonds { molid seltext } { set sel [atomselect $molid $seltext] set indexlist [$sel list] $sel delete foreach atom $indexlist { set sel [atomselect $molid "index $atom"] $sel setbonds {{}} $sel delete } }