Charmrun> started all node programs in 3.883 seconds.
Converse/Charm++ Commit ID: v6.4.0-beta1-0-g5776d21
Charm++> scheduler running in netpoll mode.
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (24-way SMP).
Charm++> cpu topology info is gathered in 0.001 seconds.
Info: NAMD 2.9 for Linux-x86_64-TCP
Info: 
Info: Please visit http://www.ks.uiuc.edu/Research/namd/
Info: for updates, documentation, and support information.
Info: 
Info: Please cite Phillips et al., J. Comp. Chem. 26:1781-1802 (2005)
Info: in all publications reporting results obtained with NAMD.
Info: 
Info: Based on Charm++/Converse 60400 for net-linux-x86_64-tcp-iccstatic
Info: Built Mon Apr 30 14:00:42 CDT 2012 by jim on thalassa.ks.uiuc.edu
Info: 1 NAMD  2.9  Linux-x86_64-TCP  24    n000-eth2  chchen
Info: Running on 24 processors, 24 nodes, 1 physical nodes.
Info: CPU topology information available.
Info: Charm++/Converse parallel runtime startup completed at 0.0452168 s
Info: 1.63396 MB of memory in use based on CmiMemoryUsage
Info: Configuration file is EB-step1.namd
Info: Working in the current directory /home/chchen/EB3D
TCL: /opt/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory
FATAL ERROR: /opt/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory
    while executing
"exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $PDBFILE $GRIDFILE $REFS $BFS $MASK $CRYSTPDB $MASKRES $MASKCUTOFF > map.log"
    invoked from within
"if {[info exists INPUTNAME]} {
  exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $INPUTNAME $GRIDFILE $REFS $BFS $MASK $CRYST..."
    (file "EB-step1.namd" line 49)
------------- Processor 0 Exiting: Called CmiAbort ------------
Reason: FATAL ERROR: /opt/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory
    while executing
"exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $PDBFILE $GRIDFILE $REFS $BFS $MASK $CRYSTPDB $MASKRES $MASKCUTOFF > map.log"
    invoked from within
"if {[info exists INPUTNAME]} {
  exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $INPUTNAME $GRIDFILE $REFS $BFS $MASK $CRYST..."
    (file "EB-step1.namd" line 49)

[0] Stack Traceback:
  [0:0] CmiAbort+0x5c  [0xcc1f02]
  [0:1] _Z8NAMD_diePKc+0x62  [0x581b4e]
  [0:2] _ZN9ScriptTcl4loadEPc+0x4e  [0xb2f1f0]
  [0:3] _Z18after_backend_initiPPc+0x448  [0x5862b0]
  [0:4] main+0x3a  [0x585e32]
  [0:5] __libc_start_main+0xfd  [0x7f544a06ed1d]
  [0:6] _ZNSt8ios_base4InitD1Ev+0x4a  [0x540eaa]
Fatal error on PE 0> FATAL ERROR: /opt/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory
    while executing
"exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $PDBFILE $GRIDFILE $REFS $BFS $MASK $CRYSTPDB $MASKRES $MASKCUTOFF > map.log"
    invoked from within
"if {[info exists INPUTNAME]} {
  exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $INPUTNAME $GRIDFILE $REFS $BFS $MASK $CRYST..."
    (file "EB-step1.namd" line 49)