Charmrun> started all node programs in 3.883 seconds. Converse/Charm++ Commit ID: v6.4.0-beta1-0-g5776d21 Charm++> scheduler running in netpoll mode. CharmLB> Load balancer assumes all CPUs are same. Charm++> Running on 1 unique compute nodes (24-way SMP). Charm++> cpu topology info is gathered in 0.001 seconds. Info: NAMD 2.9 for Linux-x86_64-TCP Info: Info: Please visit http://www.ks.uiuc.edu/Research/namd/ Info: for updates, documentation, and support information. Info: Info: Please cite Phillips et al., J. Comp. Chem. 26:1781-1802 (2005) Info: in all publications reporting results obtained with NAMD. Info: Info: Based on Charm++/Converse 60400 for net-linux-x86_64-tcp-iccstatic Info: Built Mon Apr 30 14:00:42 CDT 2012 by jim on thalassa.ks.uiuc.edu Info: 1 NAMD 2.9 Linux-x86_64-TCP 24 n000-eth2 chchen Info: Running on 24 processors, 24 nodes, 1 physical nodes. Info: CPU topology information available. Info: Charm++/Converse parallel runtime startup completed at 0.0452168 s Info: 1.63396 MB of memory in use based on CmiMemoryUsage Info: Configuration file is EB-step1.namd Info: Working in the current directory /home/chchen/EB3D TCL: /opt/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory FATAL ERROR: /opt/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory while executing "exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $PDBFILE $GRIDFILE $REFS $BFS $MASK $CRYSTPDB $MASKRES $MASKCUTOFF > map.log" invoked from within "if {[info exists INPUTNAME]} { exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $INPUTNAME $GRIDFILE $REFS $BFS $MASK $CRYST..." (file "EB-step1.namd" line 49) ------------- Processor 0 Exiting: Called CmiAbort ------------ Reason: FATAL ERROR: /opt/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory while executing "exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $PDBFILE $GRIDFILE $REFS $BFS $MASK $CRYSTPDB $MASKRES $MASKCUTOFF > map.log" invoked from within "if {[info exists INPUTNAME]} { exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $INPUTNAME $GRIDFILE $REFS $BFS $MASK $CRYST..." (file "EB-step1.namd" line 49) [0] Stack Traceback: [0:0] CmiAbort+0x5c [0xcc1f02] [0:1] _Z8NAMD_diePKc+0x62 [0x581b4e] [0:2] _ZN9ScriptTcl4loadEPc+0x4e [0xb2f1f0] [0:3] _Z18after_backend_initiPPc+0x448 [0x5862b0] [0:4] main+0x3a [0x585e32] [0:5] __libc_start_main+0xfd [0x7f544a06ed1d] [0:6] _ZNSt8ios_base4InitD1Ev+0x4a [0x540eaa] Fatal error on PE 0> FATAL ERROR: /opt/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory while executing "exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $PDBFILE $GRIDFILE $REFS $BFS $MASK $CRYSTPDB $MASKRES $MASKCUTOFF > map.log" invoked from within "if {[info exists INPUTNAME]} { exec /opt/local/bin/vmd -dispdev text -e xmdff_phenix.tcl -args $PSFFILE $INPUTNAME $GRIDFILE $REFS $BFS $MASK $CRYST..." (file "EB-step1.namd" line 49)