a-z after alchemify alias animate append array atomedit atomselect auto auto_execok auto_import auto_load auto_load_index auto_mkindex auto_mkindex_old auto_qualify auto_reset autoimd autopsf autopsfgui axes bell binary bind bindtags biocorestates break button canvas case catch cd check_biocore checkbutton clear clipboard clock close color colorinfo concat contactmap continue coord coordpdb coordtrans delatom destroy dir display dowser_gui dump echo edit encoding entry eof error eval event exec exit expr fblocked fconfigure fcopy file fileevent find_new_coordinate_position find_rotation_value first flush focus font for foreach format frame gets gettimestep glob global gopython grab graphics grid guesscoord hbonds hbondsgui help history idebug if image imd incr info interp join label labelframe lappend lassign last lcompare ldup less light lindex linsert list listbox llength load load_grid load_mopac_coords logfile lower lrange lremove lreplace lreverse ls lsearch lset lsort lvarpop lvarpush material measure membrane menu menubutton message mol molecule molinfo more mouse multiplot multiply multiseq mutate mutator namdenergy namdgui namdplot namespace nanotube noblanks observe open optimization option pack package panedwindow paratool patch pause pbc pdb pdbalias pid pkg_compareExtension pkg_mkIndex place play plugin pmepot proc psfcontext psfupdate puts pwd qmtool quit radiobutton raise ramaplot rawtimestep read readmol readpsf regenerate regexp regsub rename render reset resetpsf residue return rock rotate rotmat ruler saltbr saltbrgui scale scan scrollbar seek segment selection send set sgsderiv sgsmooth slave sleep socket solvate source spaceball specden spinbox split stage string subst switch tclLog tclPkgSetup tclPkgUnknown tcl_findLibrary tcl_unknown tell text time timeline tk tkTextScrollPages tkTextSetCursor tkTextTranspose tkTextUpDownLine tk_chooseColor tk_chooseDirectory tk_getOpenFile tk_getSaveFile tk_menuSetFocus tk_messageBox tk_popup tk_textCopy tk_textCut tk_textPaste tkcon tkcon_gets tkcon_puts tkcon_pwd tkcon_tcl_gets tkcon_tcl_puts tkrender tkwait toXML toXMLMultiple tool toplevel topology trace trans trans_from_offset trans_from_rotate trans_to_offset trans_to_rotate transabout transaxis transidentity translate transmult transoffset transtranspose transvec transvecinv unalias unknown unset update uplevel upproc upproc_del upvar user variable vecadd veccross vecdist vecdot vecinvert veclength veclength2 vecmean vecmul vecnorm vecscale vecstddev vecsub vecsum vectrans veczero vmd_atomselect_lmoveby vmd_atomselect_lmoveto vmd_atomselect_moveto vmd_calculate_structure vmd_draw_arrow vmd_draw_delete vmd_draw_pbcbox vmd_draw_prism vmd_draw_unitcell vmd_draw_vector vmd_install_extension vmd_label vmd_labelcb vmd_labelcb_multiplot vmd_labelcb_plotter vmd_labelcb_save vmd_labelcb_xmgr vmd_load_extension_packages vmd_logfile_cb vmd_menu vmd_mol_urlload vmd_plugin_scandirectory vmd_print_atom_info vmd_scale vmd_set_center vmd_tk_label vmd_tk_menu vmd_tk_scale vmdbench vmdcollab vmdcon vmdhttpProgress vmdhttpcopy vmdinfo vmdtkcon volmap vwait wait what which while winfo wm writemol writepdb writepsf