Axis Definition in Metadynamics

From: Sodiq Waheed (
Date: Wed Mar 10 2021 - 12:56:17 CST

Hello NAMD Users,

I want to calculate the helical axis of an alpha-helix of a protein and I
want to rotate that particular axis with respect to one of the domains of
the protein. Is there a way to implement and perform this in NAMD?

Thank you

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