From: Tiglath Moradkhan (moradkhantig_at_gmail.com)
Date: Thu Feb 11 2021 - 15:46:33 CST
Hi Josh
OK. Thanks. That makes sense. Is there a parameter file in the tcl plugin
for water?
Thanks
Tiglath
On Thu, Feb 11, 2021 at 12:19 PM Ropon-Palacios G. <biodano.geo_at_gmail.com>
wrote:
>
>
> Nu need add “parameters synxtaxis for your second parm file”
>
> *From: *Tiglath Moradkhan <moradkhantig_at_gmail.com>
> *Date: *Thursday, February 11, 2021 at 12:28 PM
> *To: *"ROPÓN-PALACIOS G." <biodano.geo_at_gmail.com>
> *Cc: *<namd-l_at_ks.uiuc.edu>
> *Subject: *Re: namd-l: Problem with running NAMD config file
>
>
>
> Yes. Here it is.
>
>
>
> On Wed, Feb 10, 2021 at 8:06 PM "ROPÓN-PALACIOS G." <biodano.geo_at_gmail.com>
> wrote:
>
> You can attach config file.
>
> Enviado desde mi iPhone
>
> > El 10 feb. 2021, a la(s) 8:04 p. m., Tiglath Moradkhan <
> moradkhantig_at_gmail.com> escribió:
> >
> >
> > To the NAMD community
> >
> > I'm a new a NAMD user and I'm trying to equilibrate a lipoprotein system
> via a simple minimization and equilibration simulation. I've written the
> required NAMD config file using the NAMD tutorials but when I try running
> it I get the following error message:
> >
> > FATAL ERROR: tried before startup to read config file parameter that was
> not set
> > while executing
> >
> "C:/Users/tig_m/Documents/ThesisProjectMDSimulations/PyModModels/CaliforniaSeaLionApoA1/LipidBound/par_all36_lipid.prm"
> > (file "CSApoA1.conf" line 30)
> >
> > I don't understand what the issue is. I've checked online to resolve the
> issue and found that the .prm extension are for the parameter files so
> there shouldn't be a problem with providing the correct parameter files.
> Therefore I'm confused why I'm getting this error message because I got
> these files from the provided plugin tcl folder.
> >
> > I would be very glad for your help.
> >
> >
> > Thanks
> >
> > Tiglath Moradkhan
>
>
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