From: Yuvam Bhateja (yuvamb16_at_gmail.com)
Date: Tue Oct 06 2020 - 11:19:02 CDT
I am new to VMD and Molecular Dynamics.
I want to build a ligand coated silver nanoparticle. I do not want to go
into atomistic calculation and need the composite structure for a coarse
grained calculation later.
I think the structure needs to be simulated in water.
Can someone please help what all input files I need and a step by step
procedure for constructing these files?
I have build my nanoparticle and obtained the ligand separately.
How can I reduce the no of Atoms in ligand? I obtained it from RCSB PDB.
I'll be highly obliged for any help or guidance.
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