Prevent DNA denaturation

From: Takeru KAMEDA (
Date: Thu Jun 06 2019 - 03:40:48 CDT

Dear NAMD Users

I have a question about how to add the (harmonic) interaction between several atoms which I specified.

I want to restraint each base-pair of double-stranded DNA to prevent denaturation.
Thus, I want to restrain the distance between a pair of atoms (C1' atoms in a DNA base-pair).
Thank you in advance.
Best wishes,
Takeru Kameda
PhD Student, Hiroshima University, Japan

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