Python based tool for analysis of DCD trajectories

From: Harish Srinivasan (
Date: Thu Mar 08 2018 - 23:46:32 CST

I am using NAMD to simulate various systems like bilayer, micelles,
eutectic solvents etc. Most of my analysis is using the trajectories of the
system (i.e. x,y,z coordinates of the atom). So far I have been using
catdcd to convert my dcd trajectory files to xyz format and then use it for
further analysis.

Is there any particular tool (preferably python based) that can in
principle allow me to get the (x,y,z) coordinates from DCD file based on,
different selections of residues/segments/atom_number etc?

Thank you

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