run MD simulation in NAMD using stages file strategy or all in one file ?

From: L- (
Date: Thu Dec 13 2018 - 10:12:13 CST

if i want to run MD simulation in NAMD in 1 or 2 or 100 ns.
What is the difference between run your simulation in steps"satges" in
different conf files ( minimization file then Heat, Equilibration and
production stages)
all step in one file "see attached file "
this is my conf file i tray to flow the sample conf file at web, dose this
file ruining MD ?
is this will affect the data analysis ,if yes and what exactly.

thank you

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