Re: Error with D-amino acids mid-sequence using NAMD 2.12/2.13b2 and CHARMm36

From: Giacomo Fiorin (
Date: Mon Nov 05 2018 - 11:36:47 CST

Hi everyone, there is a stream file for D amino acids in the CHARMM
distribution, under stream/prot. This can be adapted for use with PSFGen.

I would also recommend checking the CHARMM forum: they may suggest how to
do the technical steps in CHARMM as opposed to PSFGen, but the handling of
mixed L and D sequences, particularly in regard to CMAP, should be the same--00000000000089b1940579ee56bc--

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